PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10012547
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 119aa    MW: 13795.6 Da    PI: 9.9704
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10012547genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.46.9e-343997159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H+h+
  Lus10012547 39 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLNKDEGVVITTYEGNHTHP 97
                 59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-342497IPR003657WRKY domain
SuperFamilySSF1182901.44E-303198IPR003657WRKY domain
PROSITE profilePS5081130.1253499IPR003657WRKY domain
SMARTSM007745.2E-403998IPR003657WRKY domain
PfamPF031067.2E-284097IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MEAVAADHIV DHDGGSSGRK KVKKRPKYAF QTRSQVDILD DGYRWRKYGQ KAVKNNKFPR  60
SYYRCTYQGC NVKKQVQRLN KDEGVVITTY EGNHTHPIEK PSENFEHILS QMQIYTPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-281598176Probable WRKY transcription factor 4
2lex_A3e-281598176Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216937.15e-64hypothetical protein PRUPE_ppa016459mg
SwissprotQ9FYA22e-56WRK75_ARATH; Probable WRKY transcription factor 75
TrEMBLM5WY446e-64M5WY44_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s33560.11e-60(Populus trichocarpa)
STRINGSi026859m2e-60(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-57WRKY DNA-binding protein 75